{
  "_id": "6a4b768da6574ff277f9b656",
  "Package": "zooimage",
  "Type": "Package",
  "Title": "Analysis of Numerical Plankton Images",
  "Version": "5.5.2",
  "Date": "2018-06-28",
  "Author": "Philippe Grosjean [aut, cre], Kevin Denis [aut], Guillaume\nWacquet [aut]",
  "Authors@R": "c(person(\"Philippe\", \"Grosjean\", role = c(\"aut\", \"cre\"),\nemail = \"phgrosjean@sciviews.org\"),\nperson(\"Kevin\", \"Denis\", role = \"aut\",\nemail = \"kevin.denis@umons.ac.be\"),\nperson(\"Guillaume\", \"Wacquet\", role = \"aut\",\nemail = \"guillaume.wacquet@umons.ac.be\"))",
  "Maintainer": "Philippe Grosjean <phgrosjean@sciviews.org>",
  "Description": "A free (open source) solution for analyzing digital images\nof plankton. In combination with ImageJ, a free image analysis\nsystem, it processes digital images, measures individuals,\ntrains for automatic classification of taxa, and finally,\nmeasures plankton samples (abundances, total and partial size\nspectra or biomasses, etc.).",
  "License": "GPL (>= 2)",
  "URL": "http://www.sciviews.org/zooimage",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-06 09:29:58 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "cmake make libjpeg-dev libpng-dev libtiff-dev\nlibuv1-dev zlib1g-dev",
  "Repository": "https://phgrosjean.r-universe.dev",
  "Date/Publication": "2018-06-29 15:00:26 UTC",
  "RemoteUrl": "https://github.com/cran/zooimage",
  "RemoteRef": "HEAD",
  "RemoteSha": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
  "_user": "phgrosjean",
  "_type": "src",
  "_file": "zooimage_5.5.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/17de9d4a4ae176f621fd2a7a01320d9325a577ea67915b8d5196253c075095b8",
  "_filesize": 3193885,
  "_sha256": "17de9d4a4ae176f621fd2a7a01320d9325a577ea67915b8d5196253c075095b8",
  "_expires": "2026-10-14T09:34:03.000Z",
  "_created": "2026-07-06T09:29:58.000Z",
  "_published": "2026-07-06T09:34:05.693Z",
  "_jobs": [
    {
      "job": 85338865040,
      "time": 167,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8105043210"
    },
    {
      "job": 85338865041,
      "time": 176,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8105046447"
    },
    {
      "job": 85338865049,
      "time": 115,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8105023373"
    },
    {
      "job": 85338865048,
      "time": 135,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8105055284"
    },
    {
      "job": 85338220222,
      "time": 199,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8104972649"
    },
    {
      "job": 85338865060,
      "time": 152,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8105036572"
    },
    {
      "job": 85338865078,
      "time": 122,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8105023892"
    },
    {
      "job": 85338865184,
      "time": 115,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8105021229"
    },
    {
      "job": 85338865074,
      "time": 118,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8105021386"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458",
  "_status": "success",
  "_upstream": "https://github.com/cran/zooimage",
  "_commit": {
    "id": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
    "author": "Philippe Grosjean <phgrosjean@sciviews.org>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 5.5.2\n",
    "time": 1530284426
  },
  "_maintainer": {
    "name": "Philippe Grosjean",
    "email": "phgrosjean@sciviews.org",
    "login": "phgrosjean",
    "twitter": "@PhilGrosjean",
    "description": "R user and developer for stats and (marine) ecology",
    "uuid": 3286897
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.15.0",
      "role": "Depends"
    },
    {
      "package": "mlearning",
      "role": "Depends"
    },
    {
      "package": "svMisc",
      "version": ">= 0.9-67",
      "role": "Imports"
    },
    {
      "package": "svDialogs",
      "version": ">= 0.9-53",
      "role": "Imports"
    },
    {
      "package": "filehash",
      "role": "Imports"
    },
    {
      "package": "jpeg",
      "role": "Imports"
    },
    {
      "package": "png",
      "role": "Imports"
    },
    {
      "package": "tiff",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "digest",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "mda",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Imports"
    },
    {
      "package": "rJava",
      "role": "Suggests"
    },
    {
      "package": "mlbench",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "phgrosjean",
      "count": 3,
      "uuid": 3286897
    }
  ],
  "_userbio": {
    "uuid": 3286897,
    "type": "user",
    "name": "Philippe Grosjean",
    "followers": 27,
    "description": "R user and developer for stats and (marine) ecology"
  },
  "_downloads": {
    "count": 335,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/zooimage"
  },
  "_searchresults": 21,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/zooimage.html",
    "manual.pdf"
  ],
  "_realowner": "phgrosjean",
  "_cranurl": false,
  "_releases": [
    {
      "version": "3.0-3",
      "date": "2013-02-11"
    },
    {
      "version": "3.0-5",
      "date": "2014-03-02"
    },
    {
      "version": "5.5.2",
      "date": "2018-06-29"
    }
  ],
  "_exports": [
    "aboutZI",
    "acquireImg",
    "activeLearning",
    "activeLearningGUI",
    "addClass",
    "addItemsToTrain",
    "addToTest",
    "addToTrain",
    "addVigsToTrain",
    "analyzeClass",
    "calcVars",
    "calib",
    "calibrate",
    "cellCompute",
    "cellCount",
    "cellModel",
    "checkDirExists",
    "checkEmptyDir",
    "checkFileExists",
    "checkFirstLine",
    "closeAssistant",
    "closeZooImage",
    "collectTrain",
    "compTrain",
    "contextSelection",
    "correctError",
    "countCellsGUI",
    "createThreshold",
    "dropItemsToTrain",
    "dropVars",
    "ecd",
    "editDescription",
    "exitZI",
    "exportResults",
    "extensionPattern",
    "focusGraph",
    "focusR",
    "forceDirCreate",
    "getDec",
    "getTest",
    "getTrain",
    "hasExtension",
    "imageViewer",
    "importFlowCAM",
    "importImg",
    "isZim",
    "jpgList",
    "listFilesExt",
    "listObjects",
    "listSamples",
    "loadObjects",
    "makeClass",
    "makeId",
    "makeTrain",
    "makeZid",
    "makeZidb",
    "makeZidbFlowCAM",
    "makeZIVignettes",
    "modalAssistant",
    "noExtension",
    "optInOutDecimalSep",
    "parseIni",
    "pngList",
    "prepareTest",
    "prepareTrain",
    "processImg",
    "processSample",
    "processSampleAll",
    "processSamples",
    "processSamplesWithCells",
    "readFlowCAMctx",
    "readFlowCAMlst",
    "recode",
    "removeObjects",
    "sampleInfo",
    "saveObjects",
    "selectFile",
    "selectGroups",
    "selectList",
    "selectObject",
    "startPgm",
    "template",
    "trimString",
    "underscoreToSpace",
    "unzipImg",
    "unzipImgAll",
    "validClass",
    "viewFrenchManual",
    "viewManual",
    "viewResults",
    "vignettesClass",
    "zicCheck",
    "ZIClass",
    "zidbDatRead",
    "zidbDrawVignette",
    "zidbLink",
    "zidbList",
    "zidbMake",
    "zidbMakeAll",
    "zidbPlotNew",
    "zidbPlotPage",
    "zidbSampleRead",
    "zidbSummary",
    "zidbToZid",
    "zidbToZidAll",
    "zidClean",
    "zidCompress",
    "zidCompressAll",
    "zidDatMake",
    "zidDatRead",
    "ZIDlg",
    "zidList",
    "zidToZidb",
    "zidToZidbAll",
    "zidUncompress",
    "zidUncompressAll",
    "zidVerify",
    "zidVerifyAll",
    "ZIE",
    "zieCompile",
    "zieCompileFlowCAM",
    "zieMake",
    "zimCreate",
    "zimDatList",
    "zimDatMakeFlowCAM",
    "zimDatMakeFlowCAMAll",
    "zimEdit",
    "zimExtractAll",
    "zimList",
    "zimMake",
    "zimUpdateAll",
    "zimVerify",
    "zipImg",
    "zipImgAll",
    "zipList",
    "zipNoteAdd",
    "zipNoteGet",
    "zisCreate",
    "zisEdit",
    "zisRead",
    "ZIUI"
  ],
  "_help": [
    {
      "page": "zooimage.package",
      "title": "ZooImage: analysis of digital plankton images",
      "topics": [
        "zooimage-package",
        "zooimage"
      ]
    },
    {
      "page": "correctError",
      "title": "The ZooImage error correction (manual validation) tools",
      "topics": [
        "activeLearning",
        "addItemsToTrain",
        "correctError",
        "dropItemsToTrain"
      ]
    },
    {
      "page": "fileutils",
      "title": "Various file utility functions used by ZooImage",
      "topics": [
        "checkDirExists",
        "checkEmptyDir",
        "checkFileExists",
        "checkFirstLine",
        "extensionPattern",
        "forceDirCreate",
        "hasExtension",
        "jpgList",
        "listFilesExt",
        "noExtension",
        "pngList",
        "zidbList",
        "zidList",
        "zimDatList",
        "zimList",
        "zipList"
      ]
    },
    {
      "page": "gui",
      "title": "The ZooImage GUI (Graphical User Interface)",
      "topics": [
        "aboutZI",
        "acquireImg",
        "activeLearningGUI",
        "addVigsToTrain",
        "analyzeClass",
        "calib",
        "closeAssistant",
        "closeZooImage",
        "collectTrain",
        "compTrain",
        "countCellsGUI",
        "editDescription",
        "exitZI",
        "exportResults",
        "focusGraph",
        "focusR",
        "importImg",
        "listObjects",
        "loadObjects",
        "makeClass",
        "makeTrain",
        "makeZid",
        "makeZidb",
        "makeZidbFlowCAM",
        "optInOutDecimalSep",
        "processImg",
        "processSamples",
        "processSamplesWithCells",
        "removeObjects",
        "saveObjects",
        "validClass",
        "viewFrenchManual",
        "viewManual",
        "viewResults",
        "vignettesClass",
        "ZIDlg",
        "ZIUI"
      ]
    },
    {
      "page": "guiutils",
      "title": "Various GUI utility functions used by ZooImage",
      "topics": [
        "createThreshold",
        "imageViewer",
        "modalAssistant",
        "selectFile",
        "selectGroups",
        "selectList",
        "selectObject",
        "startPgm"
      ]
    },
    {
      "page": "import",
      "title": "Function to import data from the FlowCAM",
      "topics": [
        "importFlowCAM",
        "readFlowCAMctx",
        "readFlowCAMlst"
      ]
    },
    {
      "page": "utilities",
      "title": "Various utility functions used by ZooImage",
      "topics": [
        "addClass",
        "calcVars",
        "calibrate",
        "dropVars",
        "ecd",
        "getDec",
        "listSamples",
        "makeId",
        "makeZIVignettes",
        "parseIni",
        "sampleInfo",
        "trimString",
        "underscoreToSpace",
        "zipNoteAdd",
        "zipNoteGet"
      ]
    },
    {
      "page": "zic",
      "title": "Check .zic files (ZooImage Categories)",
      "topics": [
        "zicCheck"
      ]
    },
    {
      "page": "ZIClass",
      "title": "Create and manipulate 'ZIClass' objects",
      "topics": [
        "confusion.ZIClass",
        "predict.ZIClass",
        "print.ZIClass",
        "summary.ZIClass",
        "ZIClass"
      ]
    },
    {
      "page": "zid",
      "title": "Manage .zid files (ZooImage Data)",
      "topics": [
        "zidClean",
        "zidCompress",
        "zidCompressAll",
        "zidDatMake",
        "zidDatRead",
        "zidUncompress",
        "zidUncompressAll",
        "zidVerify",
        "zidVerifyAll"
      ]
    },
    {
      "page": "zidb",
      "title": "Manage .zidb files (ZooImage Databases)",
      "topics": [
        "zidbDatRead",
        "zidbDrawVignette",
        "zidbLink",
        "zidbMake",
        "zidbMakeAll",
        "zidbPlotNew",
        "zidbPlotPage",
        "zidbSampleRead",
        "zidbSummary",
        "zidbToZid",
        "zidbToZidAll",
        "zidToZidb",
        "zidToZidbAll"
      ]
    },
    {
      "page": "zie",
      "title": "ZIE (ZooImage Extension) manipulate .zie files to add custom import, export, etc. routines to ZooImage",
      "topics": [
        "print.ZIE",
        "ZIE",
        "zieCompile",
        "zieCompileFlowCAM",
        "zieMake"
      ]
    },
    {
      "page": "zim",
      "title": "Manipulate .zim files (ZooImage Metadata/Measurements)",
      "topics": [
        "isZim",
        "zimCreate",
        "zimDatMakeFlowCAM",
        "zimDatMakeFlowCAMAll",
        "zimEdit",
        "zimExtractAll",
        "zimMake",
        "zimUpdateAll",
        "zimVerify"
      ]
    },
    {
      "page": "zip",
      "title": "Zip and unzip raw .tif images for ZooImage and embed metadata",
      "topics": [
        "unzipImg",
        "unzipImgAll",
        "zipImg",
        "zipImgAll"
      ]
    },
    {
      "page": "ZIRes",
      "title": "Various function to calculate results ('ZIRes' object)",
      "topics": [
        "print.ZIRes",
        "processSample",
        "processSampleAll",
        "rbind.ZIRes"
      ]
    },
    {
      "page": "zis",
      "title": "Manipulate .zis files (ZooImage Samples description)",
      "topics": [
        "zisCreate",
        "zisEdit",
        "zisRead"
      ]
    },
    {
      "page": "ZITrain",
      "title": "Manipulate training and testsets 'ZITrain'/'ZITest' objects",
      "topics": [
        "addToTest",
        "addToTrain",
        "cellCompute",
        "cellCount",
        "cellModel",
        "contextSelection",
        "getTest",
        "getTrain",
        "prepareTest",
        "prepareTrain",
        "recode",
        "recode.ZITest",
        "recode.ZITrain",
        "template",
        "template.default"
      ]
    }
  ],
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "class",
    "cli",
    "codetools",
    "commonmark",
    "cpp11",
    "crosstalk",
    "data.table",
    "diagram",
    "digest",
    "DT",
    "e1071",
    "evaluate",
    "farver",
    "fastmap",
    "filehash",
    "fontawesome",
    "fs",
    "future",
    "future.apply",
    "ggplot2",
    "globals",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "ipred",
    "isoband",
    "jpeg",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lava",
    "lazyeval",
    "lifecycle",
    "listenv",
    "magrittr",
    "MASS",
    "Matrix",
    "mda",
    "memoise",
    "mime",
    "mlearning",
    "nnet",
    "numDeriv",
    "otel",
    "parallelly",
    "png",
    "prodlim",
    "progressr",
    "promises",
    "proxy",
    "R6",
    "randomForest",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "rpart",
    "rstudioapi",
    "S7",
    "sass",
    "scales",
    "shape",
    "shiny",
    "sourcetools",
    "SQUAREM",
    "survival",
    "svDialogs",
    "svGUI",
    "svMisc",
    "tiff",
    "tinytex",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml"
  ],
  "_score": 1.3222192947339193,
  "_indexed": true,
  "_nocasepkg": "zooimage",
  "_universes": [
    "phgrosjean"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "5.5.2",
      "date": "2026-07-06T09:32:21.000Z",
      "distro": "resolute",
      "commit": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
      "fileid": "https://r2.ropensci.org/cab2a6313e778fed6d669b78970d1442be1db01de282b69c85d8349a44e9e710",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "5.5.2",
      "date": "2026-07-06T09:32:28.000Z",
      "distro": "resolute",
      "commit": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
      "fileid": "https://r2.ropensci.org/90514811d9929b72986af1cab68eda59e583b92b273351aa0d421cd10d6fa8ce",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "5.5.2",
      "date": "2026-07-06T09:31:53.000Z",
      "commit": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
      "fileid": "https://r2.ropensci.org/5c2646b892c48b18a070e14d7da171f3abb403aab8d29376652ff06f04c2575f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "5.5.2",
      "date": "2026-07-06T09:32:55.000Z",
      "commit": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
      "fileid": "https://r2.ropensci.org/9a59269532c3c51157c864d7b76199d8cebd59952d6185e8dcedfe38c74f960d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "5.5.2",
      "date": "2026-07-06T09:32:51.000Z",
      "commit": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
      "fileid": "https://r2.ropensci.org/fb8f2774cff50ce0d6a943fa64f4aca4f68abfbb018c7313ca80d5cbf262ddeb",
      "status": "success",
      "buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "5.5.2",
      "date": "2026-07-06T09:31:27.000Z",
      "commit": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
      "fileid": "https://r2.ropensci.org/d8551e3c73bbe6151f33fbecdd5289cea4ac0573fb66c47a73d6ffae9149f019",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "5.5.2",
      "date": "2026-07-06T09:31:22.000Z",
      "commit": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
      "fileid": "https://r2.ropensci.org/c22cbbbb7381981425c067dfb7f9fd4720129de47929eb380cd74f6ba1187bb5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "5.5.2",
      "date": "2026-07-06T09:31:19.000Z",
      "commit": "f1f6cebc1faae5f49087275c69b6c67037a20b0c",
      "fileid": "https://r2.ropensci.org/734c28d116daa06237d072026bca271a514e2e6d8d8eb973178d094523b48ab3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/phgrosjean/actions/runs/28781568458"
    }
  ]
}